Non-Canonical Helper Structural Snapshot Measurement Architecture Not a protocol

CAIS Aptamer G-Iodine — Minimal Kernel Diagram v1.0

A compact builder-facing view of Aptamer G-Iodine as the minimal molecular kernel (M0) inside the CAIS / Sal-Meter stack: where it sits, what it gates, how signal-ready events move downstream, and how this differs from Human-State-Aware AI proxy benchmark infrastructure.

Current public execution order: External Layer-0 → SICS Internal Phase 0 (G-only) → Phase 1 (I-only) → Phase 2a (Twin Mini-Cell) → Phase 2b (G+I human pilot) → LOCK 1 / LOCK 2 review → post-lock SDK / broader opening. Layer 0 remains a research-stage, non-diagnostic, non-therapeutic, non-clinical, pre-device signal-interface track.
Document Type
Non-canonical helper / structural snapshot
Kernel Role
Minimal molecular kernel (M0) / signal gate
Public Status
Research-stage · non-diagnostic · non-therapeutic · non-clinical
Authority
Canonical authority remains fixed only in DOI / OSF records
Boundary: this page explains where M0 sits in the Sal-Meter core signal stack. It is not a wet-lab protocol, not a sequence design page, not a diagnostic page, and not a certification page.
What this page is

A signal-gating page, not a meaning-making page

M0 is not “meaning.” M0 is signal gating.

This page exists to help an engineer, PI, or technical lead understand the smallest stable molecular gate in the CAIS / Sal-Meter stack. It does not redefine CAIS, Sal-Meter, OE / RE / EE, VCE / CRI / CFI, or any compliance boundary.

이 페이지의 역할은 Aptamer G-Iodine을 “의미 해석”이 아니라 “신호 게이트”로 정확히 위치시키는 것입니다.

Core track vs proxy benchmark track

M0 belongs to the Sal-Meter core signal track

This page must not be confused with Human-State-Aware AI proxy benchmarking. M0 is part of the molecular–electrochemical core path. Proxy benchmark work is a parallel support route.

Core signal track

Sal-Meter M0 kernel

Aptamer G-Iodine is framed as a minimal signal gate inside the CAIS / Sal-Meter core stack.

  • molecular–electrochemical signal interface
  • External Layer-0 first
  • G-only / I-only internal locks later
  • Twin Mini-Cell and human pilot only downstream
Proxy benchmark track

Human-State-Aware AI Interaction

Proxy benchmarking uses existing human-state signals to build synchronized comparison infrastructure.

  • ECG / HRV / EDA / PPG / EEG
  • eye / gaze / behavioral timing
  • metadata discipline and leakage-safe evaluation
  • future comparison layer for Sal-Meter inputs
Boundary rule

Do not merge the tracks

Proxy signals do not become Sal-Meter by being synchronized. M0 helper diagrams do not certify a device.

  • No diagnostic or therapeutic claim
  • No CAIS compliance claim
  • No certified Sal-Meter claim
  • No GitHub-as-authority framing
Minimal kernel

Why Aptamer G-Iodine is treated as M0

A

Minimal

The smallest controlled gate that can turn molecular state transitions into repeatable signal events.

B

Controllable

It runs under a bounded interface environment rather than open-ended interpretation.

C

Signal-producing

Binding, conformational, and redox-related transitions are treated as transducible signal events.

D

Non-therapeutic

It sits inside a cartridge / measurement chamber as a sensing interface, not as treatment.

What the molecule gates

Signal gate logic, not experimental recipe

This page describes the conceptual gating role only. It does not provide wet-lab sequence design, experimental optimization, or operational protocol.

1

Iodine redox logic

Iodine redox behavior provides one side of the molecular signal-interface logic.

2

Thiol / redox-state interface

The paired redox-state environment provides an interface context for signal-readiness evaluation.

3

State transitions as measurable events

Binding, conformation, and redox-linked transitions are treated as signal events first. Clinical meaning is not assigned at Layer 0.

This section is intentionally non-procedural. It is an architecture view, not a lab instruction, protocol, concentration guide, sequence-generation surface, or optimization plan.
Signal path

How M0 moves downstream

L0

Molecular Interface

Input: controlled biological / chemical state. Output: signal-ready events with no clinical meaning attached.

L1–2

Signal + Metric Pipeline

Transduction → preprocessing → feature extraction → stability checks.

L3

Index Computation

OE / RE / EE → VCE / CRI / CFI only under CAIS-defined computation and validation workflow.

L4

Interpretation & Governance

Validation workflow, compliance boundary, multi-team checks, and misuse control sit downstream of M0.

M0 does not carry final interpretation by itself. It feeds a downstream pipeline that must remain claims-controlled, metadata-controlled, and governance-bounded.
Measurement cartridge

External cartridge / chamber view

Layer 0 runs inside the cartridge as a non-therapeutic interface. The system measures molecular state transitions and outputs signals for downstream processing, not clinical meaning.

Device boundary → external cartridge / chamber
Controlled fluidic environment → bounded sample-interface context
M0 module → Aptamer G-Iodine inside the measurement layer
Transduction → electrochemical / optical / photonic signal-readout pathway
Output → measurable signal events → CAIS pipeline
Use this as a conceptual diagram for placement and routing. Do not convert it into a public wet-lab procedure.
Current execution order

Where M0 sits in the current program order

1

External Layer-0

Chemistry-first feasibility support: iodine redox / thiol interface, baseline stability, perturbation response, repeatability, raw data, and metadata.

2

SICS Internal Phase 0 — G-only

Internal state-gate work begins only after the external feasibility logic is bounded.

3

Phase 1 — I-only

I-channel reproducibility and target logic become relevant downstream of earlier feasibility and internal gate work.

4

Phase 2a / 2b

Twin Mini-Cell, cross-talk control, leak testing, and later G+I human pilot remain downstream.

5

LOCK 1 / LOCK 2 → SDK / broader opening

Broader opening belongs only after Interface Exists and Interface Matters are reviewed under fixed criteria.

External Layer-0 is not SICS Internal Phase 0. Human-State AI proxy benchmark work is not any Sal-Meter phase. It is a parallel support and comparison layer.
Researcher / engineer / hiring route

Who should use this page

Core role

ESL

Electrochemical Systems Lead. Uses this page to understand physical consistency, interface placement, acquisition discipline, drift handling, and SOP lock.

Core role

EStL

Evidence & Standardization Lead. Uses this page to frame metadata, QC, leakage control, audit trail, reproducibility pack, and claims discipline.

Proxy roles

PBEE · MDE · HSOPM

Proxy benchmark builders should use this page only to understand what they are not replacing: the Sal-Meter core molecular signal path.

GitHub helper boundary

What proxy-benchmark-track GitHub can and cannot do

Allowed public content

What belongs in GitHub

README, metadata schema drafts, synthetic datasets, example notebooks, dashboard mockups, issue templates, reproducibility checklists, and public development roadmap.

Controlled content

What must stay out

Raw human data, identifiable session records, consent files, private labels, unreviewed performance claims, clinical interpretations, and any wording implying CAIS compliance or Sal-Meter certification.

GitHub is a builder-facing helper surface. DOI / OSF records remain the authority layer.